I think a lot of people know this but...
Ford used two blues,
I think the last year for Black was 1965, one blue lasted only one year 1966, then a darker blue was used from 67 on.
I do not know if the GT40s used blue after 1965, (forum members above this post indicated black only) If the engines were black for all GT40s over the years, I still suspect that a number of GT40s ended up with blue engines when service blocks were purchased and put in over the years. I have a 427 service block that sat in 1031 for a number of years and it was the 67' on blue.
The restoration picture of the engine from the link below looks like they painted the engine the 67' and later blue.
Ford GT40 Restoration - The Motivation