I should share some of the issues after driving the car a few miles. It may help the next guy.
After driving the car to the alignment shop, about 12 miles, both CV boots on the right half shaft are off, see pictures. The axle angle is about 23 deg. at full drop and about 18 at normal drive height. I assumed that the axle damaged the boot flange and the boot pulled off. The reason for my guess is the boot flange appears bent, no flat surface for the boot to clamp to. The shaft does hit the flange at full drop. Talking with the Drive Shaft Shop they suggested High Speed CV Boots. They are in the mail. When they arrive I will post some pictures showing the repair.
The next thing on my list is doing something about is engine temperature.
Making that drive in stop and go Houston traffic the water temp did get to 220 F for that last mile and the pressure relief popped when I drove into the alignment garage. I pulled a hard vacuum when filling the cooling system so I sure it's not an air bubble, expansion talk was still full after it cooled off. Looking through old motor build pictures it appears the head gaskets are on right. I'm running the biggest CFM fans I could find but not sure they were running when I got out of the car. They did both work at on time. Will advise when I find something.
Everyone that has a GT knows how much fun these cars are to drive! Fun!