I have received a reply from Lukas (thanks, Lukas). I will post the reply in it's entirety below:
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Mark,
I just spoke to him. My problem is the same as with my FFR Cobra, I only hang out on US forums so there a lots of technical terms I dont know in my mother language. Sounds stupid, I know! Also, my technical knowledge of transaxles is limited, so take everything I say with a grain of salt

!!
1.Can we have some background information on Herr Kluge’s involvement with Getrag transaxles and Audi motorsports?
He was working directly for Audi mainly in the repair area, the fitting of the transmission to the cars and some developpment.
2.Which transaxle is stronger, 016 or 01E, and why?
Definitely the 01E, much better and also more modern.
3.How much torque can each one take in stock form?
Couldn’t give me detailed numbers. Depending on vehicle weight and the ability to hook up, around 300 to 400 nm (little bit less in lbs).
4.What is the weakest link in the 016 transaxle? In the 01E transaxle?
In the 016 it’s the first gear, I think he said in the 01E, too.
5.Are there differences in strength among the stock 016 transaxles? Among the stock 01E transaxles?
The 016 seems to have been very similar over the years, but the 01E has been developed and is still used.
6.Can the tailshaft of a Quattro transaxle simply be cut off and a new tailhousing used to convert it for 2WD duty, or do we need to use only 2WD transaxles?
Cutting off will not be that simple, as the rear(?) output still needs to be working. He said some people simply put a “dummy” solid axle on there to convert it to 2WD, but this might not make it short enough to fit the 40. But the rest of the innards seems to be very similar/same.
7.What modifications does Herr Kluge perform to the 016 and 01E transaxles and what does it cost? How much torque can the Kluge-modified gearboxes take?
If you were hoping to find a Derek Bell solution, I have to disappoint you. He mainly does repairs but also manufactures some other parts. Not exactly sure which ones.
8.The first gear on the 016 and 01E transaxles is typically 3.50 and above, which is too high for many V8 applications. Are numerically lower first gear ratios available as part of Herr Kluge’s modifications?
First gears are not available. The short gears were made for diesel cars, which don’t rev as high. He said first gear is part of the main shaft (?) and is very hard to change out. Even race cars use the same mainshaft but it is treated some way (heat probably) to give a little bit more strength. A new standard one would run around 900 USD, and even if having a batch of 30 made, a customs one will easily cost 3 or 4 times that.
9.At what power level is transaxle gearbox oil cooling recommended? How are the oil cooling systems configures?
This cannot be uniformly answered as it really depends on many factors. As a general rule, the temperature in the gearbox should not be above 120 °C for continuous use. You would have to measure temp and see if you get above that. The easiest setup is the mechanical one used on the 01E (might be only Quattro) which works very well.
10.Is there a US distributor for Herr Kluges transaxles and services?
Nope. He does his work in a shop in Germany (sounds like a medium sized transmission shop to me)
His general opinion was that we should concentrate on the 01E, as the 016 is long since obsolete and all production rights (for spare parts maybe) have been sold to China. The 01E is more up-to-date and has more aftermarket support.
According to him, his English is good enough to talk about this stuff, and you are welcome to give him a call if you want to know more details. If you do, Germany has a 6+ hour time difference to Mass and most shops are open from 8-5pm.
Hope this helps,
Lukas
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Unfortunately, I was rather hoping for a Derek Bell-type solution, but it looks as if we will have to live with minimum rations of 3.50 for first gear and 3.88 for the final drive, for a total torque multiplication of 13.58 in first gear. Good for drag racing anyway!
Any other questions we should ask Herr Kluge?